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Improving structure-based protein-ligand affinity prediction by graph representation learning and ensemble learning 期刊论文
PLOS ONE, 2024, 卷号: 19, 期号: 1, 页码: 21
作者:  Guo, Jia
收藏  |  浏览/下载：191/0  |  提交时间：2024/04/07
Single-molecule recognition of Nucleolin and the interactions with DNA/ RNA G-quadruplexes via nanopore decoding 期刊论文
CHEMICAL ENGINEERING JOURNAL, 2023, 卷号: 473, 页码: 9
作者:  Wang, Zhong;  Qin, Fupeng;  Wu, Ji;  Ma, Wenhao;  Li, Rongjie;  Weng, Ting;  Yin, Bohua;  Wang, Liang;  Wang, Deqiang;  Liang, Liyuan
收藏  |  浏览/下载：10/0  |  提交时间：2024/03/01
DNA/RNA G-quadruplexes  Nucleolin  Interactions  Solid-state nanopore  Single-molecule  
Copper oxidase and encapsulin shell protein in anammox bacteria reduces phenol toxicity from water 期刊论文
JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING, 2023, 卷号: 11, 期号: 3, 页码: 8
作者:  Ma, Teng-Fei;  Yu, Xiao-Yao;  Xing, Chong-Yang;  Shen, Yu;  Chen, You-Peng;  Chen, Xuan;  Peng, Meng-Wen
收藏  |  浏览/下载：10/0  |  提交时间：2023/12/25
Anammox  Encapsulin shell protein  Copper oxidase  Phenol  
Insights Gained from RNA Editing Targeted by the CRISPR-Cas13 Family 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 19, 页码: 22
作者:  Liu, Li;  Pei, De-Sheng
收藏  |  浏览/下载：45/0  |  提交时间：2022/12/26
CRISPR  Cas13  Cas13d  Cas13X  RNA cleavage activity  CRISPR-Cas VI system  

Encapsulins from Ca. Brocadia fulgida: An effective tool to enhance the tolerance of engineered bacteria (pET-28a-cEnc) to Zn2+

 期刊论文
JOURNAL OF HAZARDOUS MATERIALS, 2022, 卷号: 435, 页码: 11
作者:  Wang, Que;  Zhou, Yue-Ming;  Xing, Chong-Yang;  Li, Wen-Chao;  Shen, Yu;  Yan, Peng;  Guo, Jin -Song;  Fang, Fang;  Chen, You -Peng
收藏  |  浏览/下载：82/0  |  提交时间：2022/08/22
Encapsulins  Zn2+  Overexpression  Escherichia coli  Proteomics  
Single-Molecule Identification of the Conformations of Human C-Reactive Protein and Its Aptamer Complex with Solid-State Nanopores 期刊论文
ACS APPLIED MATERIALS & INTERFACES, 2022, 卷号: 14, 期号: 10, 页码: 12077-12088
作者:  Wu, Ji;  Liang, Liyuan;  Zhang, Mingkun;  Zhu, Rui;  Wang, Zhong;  Yin, Yajie;  Yin, Bohua;  Weng, Ting;  Fang, Shaoxi;  Xie, Wanyi;  Wang, Liang;  Wang, Deqiang
收藏  |  浏览/下载：78/0  |  提交时间：2022/08/22
solid-state nanopore  C-reactive protein  aptamer  single-molecule  conformation  
Hydrological seasonality and nutrient stoichiometry control dissolved organic matter characterization in a headwater stream 期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2022, 卷号: 807, 页码: 10
作者:  Li, Siyue;  Luo, Jiachen;  Xu, Y. Jun;  Zhang, Liuqing;  Ye, Chen
收藏  |  浏览/下载：165/0  |  提交时间：2021/12/23
Dissolved organic carbon  Allochthonous and autochthonous DOM  Headwater carbon flux  Excitation emission matrix fluorescence  Anthropogenic inputs  Stoichiometric ratios  
An Effective Link-Based Clustering Algorithm for Detecting Overlapping Protein Complexes in Protein-Protein Interaction Networks 期刊论文
IEEE TRANSACTIONS ON NETWORK SCIENCE AND ENGINEERING, 2021, 卷号: 8, 期号: 4, 页码: 3275-3289
作者:  Hu, Lun;  Zhang, Jun;  Pan, Xiangyu;  Luo, Xin;  Yuan, Huaqiang
收藏  |  浏览/下载：42/0  |  提交时间：2022/08/22
Proteins  Clustering algorithms  Biology  Search problems  Partitioning algorithms  Optimization  Protein complex detection  protein-protein interaction network  link-based clustering  network clustering  
Application of network link prediction in drug discovery 期刊论文
BMC Bioinformatics, 2021, 卷号: 22, 期号: 1
作者:  Abbas,Khushnood;  Abbasi,Alireza;  Dong,Shi;  Niu,Ling;  Yu,Laihang;  Chen,Bolun;  Cai,Shi-Min;  Hasan,Qambar
收藏  |  浏览/下载：48/0  |  提交时间：2021/05/17
Data-driven drug discovery  Network link prediction  Poly-pharmacy  Poly-pharmacy side effects prediction  Drug-target prediction  
Hydrological seasonality largely contributes to riverine dissolved organic matter chemical composition: Insights from EEM-PARAFAC and optical indicators 期刊论文
JOURNAL OF HYDROLOGY, 2021, 卷号: 595, 页码: 9
作者:  Ma, Yongmei;  Mao, Rong;  Li, Siyue
收藏  |  浏览/下载：84/0  |  提交时间：2021/08/20
Dissolved organic matter (DOM)  Excitation-emission matrix (EEM) fluorescence spectroscopy  Temporal and spatial variation  Parallel factor analysis (PARAFAC)  Yangtze (Changjiang)